Forum:Willowtree help!

Whenever I use the modding program willowtree on my pc save file, everything works smooth, up to the point where I load my file. I then get to watch the opening scenes all over, and choose my character, get my hud from claptrap, etc. It starts me over, but the loading screen shows all my actual information. Im using the most up to date willowtree, and im playing borderlands patch 1.3 with no dlcs.